Andrea S Foulkes

InstitutionNewton-Wellesley Hospital
AddressUnited States
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    Publication Timeline
    COVID-19 publications
    Bar chart showing 8 Covid-19 publications, with a maximum of 2 publications in October 2020 and December 2020
    All Publications
    Bar chart showing 55 publications over 17 distinct years, with a maximum of 8 publications in 2011
    These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.

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    Publication Field Summary
    This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
    Publication List
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Bunnell KM, Thaweethai T, Buckless C, Shinnick DJ, Torriani M, Foulkes AS, Bredella MA. Body composition predictors of outcome in patients with COVID-19. Int J Obes (Lond). 2021 10; 45(10):2238-2243. PMID: 34244597.
      Citations: 2     Fields:    Translation:Humans
    2. Goehler A, Hsu TH, Seiglie JA, Siedner MJ, Lo J, Triant V, Hsu J, Foulkes A, Bassett I, Khorasani R, Wexler DJ, Szolovits P, Meigs JB, Manne-Goehler J. Visceral Adiposity and Severe COVID-19 Disease: Application of an Artificial Intelligence Algorithm to Improve Clinical Risk Prediction. Open Forum Infect Dis. 2021 Jul; 8(7):ofab275. PMID: 34258315.
      Citations: 1     
    3. Lau ES, McNeill JN, Paniagua SM, Liu EE, Wang JK, Bassett IV, Selvaggi CA, Lubitz SA, Foulkes AS, Ho JE. Sex differences in inflammatory markers in patients hospitalized with COVID-19 infection: Insights from the MGH COVID-19 patient registry. PLoS One. 2021; 16(4):e0250774. PMID: 33909684.
      Citations: 5     Fields:    Translation:Humans
    4. McNeill JN, Lau ES, Paniagua SM, Liu EE, Wang JK, Bassett IV, Selvaggi CA, Lubitz SA, Foulkes AS, Ho JE. The role of obesity in inflammatory markers in COVID-19 patients. Obes Res Clin Pract. 2021 Jan-Feb; 15(1):96-99. PMID: 33390322.
      Citations: 6     Fields:    Translation:Humans
    5. Bassett IV, Triant VA, Bunda BA, Selvaggi CA, Shinnick DJ, He W, Lu F, Porneala BC, Cao T, Lubitz SA, Meigs JB, Hsu J, Foulkes AS. Massachusetts general hospital Covid-19 registry reveals two distinct populations of hospitalized patients by race and ethnicity. PLoS One. 2020; 15(12):e0244270. PMID: 33351826.
      Citations: 9     Fields:    Translation:Humans
    6. Robinson LB, Fu X, Bassett IV, Triant VA, Foulkes AS, Zhang Y, Camargo CA, Blumenthal KG. COVID-19 severity in hospitalized patients with asthma: A matched cohort study. J Allergy Clin Immunol Pract. 2021 01; 9(1):497-500. PMID: 33164794.
      Citations: 10     Fields:    Translation:Humans
    7. Citations: 389     Fields:    Translation:Humans
    8. Seiglie J, Platt J, Cromer SJ, Bunda B, Foulkes AS, Bassett IV, Hsu J, Meigs JB, Leong A, Putman MS, Triant VA, Wexler DJ, Manne-Goehler J. Diabetes as a Risk Factor for Poor Early Outcomes in Patients Hospitalized With COVID-19. Diabetes Care. 2020 12; 43(12):2938-2944. PMID: 32847827.
      Citations: 18     Fields:    Translation:Humans
    9. Ray EL, Qian J, Brecha R, Reilly MP, Foulkes AS. Stochastic imputation for integrated transcriptome association analysis of a longitudinally measured trait. Stat Methods Med Res. 2020 04; 29(4):1167-1180. PMID: 31172883.
      Citations: 1     Fields:    Translation:Cells
    10. Zhang H, Xue C, Wang Y, Shi J, Zhang X, Li W, Nunez S, Foulkes AS, Lin J, Hinkle CC, Yang W, Morrisey EE, Rader DJ, Li M, Reilly MP. Deep RNA Sequencing Uncovers a Repertoire of Human Macrophage Long Intergenic Noncoding RNAs Modulated by Macrophage Activation and Associated With Cardiometabolic Diseases. J Am Heart Assoc. 2017 Nov 13; 6(11). PMID: 29133519.
      Citations: 16     Fields:    Translation:HumansCells
    11. Qian J, Nunez S, Kim S, Reilly MP, Foulkes AS. A score test for genetic class-level association with nonlinear biomarker trajectories. Stat Med. 2017 Aug 30; 36(19):3075-3091. PMID: 28543585.
      Citations: 1     Fields:    Translation:Humans
    12. Chen S, Nunez S, Reilly MP, Foulkes AS. Bayesian variable selection for post-analytic interrogation of susceptibility loci. Biometrics. 2017 06; 73(2):603-614. PMID: 27858978.
      Citations: 1     Fields:    Translation:Humans
    13. Ballantyne RL, Zhang X, Nuñez S, Xue C, Zhao W, Reed E, Salaheen D, Foulkes AS, Li M, Reilly MP. Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits. Hum Mol Genet. 2016 07 15; 25(14):3125-3141. PMID: 27288454.
      Citations: 17     Fields:    Translation:HumansCells
    14. Lin J, Hu Y, Nunez S, Foulkes AS, Cieply B, Xue C, Gerelus M, Li W, Zhang H, Rader DJ, Musunuru K, Li M, Reilly MP. Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing. Arterioscler Thromb Vasc Biol. 2016 07; 36(7):1434-47. PMID: 27230130.
      Citations: 17     Fields:    Translation:HumansCells
    15. Qian J, Nunez S, Reed E, Reilly MP, Foulkes AS. A Simple Test of Class-Level Genetic Association Can Reveal Novel Cardiometabolic Trait Loci. PLoS One. 2016; 11(2):e0148218. PMID: 26859766.
      Citations: 5     Fields:    Translation:Humans
    16. Papasavvas E, Foulkes A, Yin X, Joseph J, Ross B, Azzoni L, Kostman JR, Mounzer K, Shull J, Montaner LJ. Plasmacytoid dendritic cell and functional HIV Gag p55-specific T cells before treatment interruption can inform set-point plasma HIV viral load after treatment interruption in chronically suppressed HIV-1(+) patients. Immunology. 2015 Jul; 145(3):380-90. PMID: 25684333.
      Citations: 8     Fields:    Translation:HumansCells
    17. Shah R, Matthews GJ, Shah RY, McLaughlin C, Chen J, Wolman M, Master SR, Chai B, Xie D, Rader DJ, Raj DS, Mehta NN, Budoff M, Fischer MJ, Go AS, Townsend RR, He J, Kusek JW, Feldman HI, Foulkes AS, Reilly MP. Serum Fractalkine (CX3CL1) and Cardiovascular Outcomes and Diabetes: Findings From the Chronic Renal Insufficiency Cohort (CRIC) Study. Am J Kidney Dis. 2015 Aug; 66(2):266-73. PMID: 25795074.
      Citations: 12     Fields:    Translation:Humans
    18. Abdulhaqq SA, Martinez MI, Kang G, Foulkes AS, Rodriguez IV, Nichols SM, Hunter M, Sariol CA, Ruiz LA, Ross BN, Yin X, Speicher DW, Haase AT, Marx PA, Li Q, Kraiselburd EN, Montaner LJ. Serial cervicovaginal exposures with replication-deficient SIVsm induce higher dendritic cell (pDC) and CD4+ T-cell infiltrates not associated with prevention but a more severe SIVmac251 infection of rhesus macaques. J Acquir Immune Defic Syndr. 2014 Apr 01; 65(4):405-13. PMID: 24226059.
      Citations: 7     Fields:    Translation:AnimalsCells
    19. Mehta NN, Matthews GJ, Krishnamoorthy P, Shah R, McLaughlin C, Patel P, Budoff M, Chen J, Wolman M, Go A, He J, Kanetsky PA, Master SR, Rader DJ, Raj D, Gadegbeku CA, Shah R, Schreiber M, Fischer MJ, Townsend RR, Kusek J, Feldman HI, Foulkes AS, Reilly MP. Higher plasma CXCL12 levels predict incident myocardial infarction and death in chronic kidney disease: findings from the Chronic Renal Insufficiency Cohort study. Eur Heart J. 2014 Aug 14; 35(31):2115-22. PMID: 24306482.
      Citations: 15     Fields:    Translation:Humans
    20. Ferguson JF, Matthews GJ, Townsend RR, Raj DS, Kanetsky PA, Budoff M, Fischer MJ, Rosas SE, Kanthety R, Rahman M, Master SR, Qasim A, Li M, Mehta NN, Shen H, Mitchell BD, O'Connell JR, Shuldiner AR, Ho WK, Young R, Rasheed A, Danesh J, He J, Kusek JW, Ojo AO, Flack J, Go AS, Gadegbeku CA, Wright JT, Saleheen D, Feldman HI, Rader DJ, Foulkes AS, Reilly MP. Candidate gene association study of coronary artery calcification in chronic kidney disease: findings from the CRIC study (Chronic Renal Insufficiency Cohort). J Am Coll Cardiol. 2013 Aug 27; 62(9):789-98. PMID: 23727086.
      Citations: 16     Fields:    Translation:Humans
    21. Azzoni L, Foulkes AS, Papasavvas E, Mexas AM, Lynn KM, Mounzer K, Tebas P, Jacobson JM, Frank I, O'Doherty U, Kostman J, Montaner LJ. Improved treatment for primary HIV infection by interferon-alfa therapy? Does HCV treatment in HIV/HCV coinfected patients help us to test this hypothesis? Reply to zur Wiesch and van Lunzen. J Infect Dis. 2013 Jul 15; 208(2):363. PMID: 23570845.
      Citations: 3     Fields:    Translation:HumansCells
    22. Foulkes AS, Matthews GJ, Das U, Ferguson JF, Lin R, Reilly MP. Mixed modeling of meta-analysis P-values (MixMAP) suggests multiple novel gene loci for low density lipoprotein cholesterol. PLoS One. 2013; 8(2):e54812. PMID: 23405096.
      Citations: 3     Fields:    Translation:Humans
    23. Mexas AM, Graf EH, Pace MJ, Yu JJ, Papasavvas E, Azzoni L, Busch MP, Di Mascio M, Foulkes AS, Migueles SA, Montaner LJ, O'Doherty U. Concurrent measures of total and integrated HIV DNA monitor reservoirs and ongoing replication in eradication trials. AIDS. 2012 Nov 28; 26(18):2295-306. PMID: 23014521.
      Citations: 51     Fields:    Translation:HumansCells
    24. Azzoni L, Foulkes AS, Papasavvas E, Mexas AM, Lynn KM, Mounzer K, Tebas P, Jacobson JM, Frank I, Busch MP, Deeks SG, Carrington M, O'Doherty U, Kostman J, Montaner LJ. Pegylated Interferon alfa-2a monotherapy results in suppression of HIV type 1 replication and decreased cell-associated HIV DNA integration. J Infect Dis. 2013 Jan 15; 207(2):213-22. PMID: 23105144.
      Citations: 115     Fields:    Translation:HumansCells
    25. Azzoni L, Foulkes AS, Firnhaber C, Yin X, Xiang ZQ, Li Y, Stevens W, Gross R, Ertl HC, Sanne I, Montaner LJ. Antiretroviral therapy interruptions result in loss of protective humoral immunity to neoantigens in HIV-infected individuals. AIDS. 2012 Jul 17; 26(11):1355-62. PMID: 22516873.
      Citations: 2     Fields:    Translation:HumansCells
    26. Azzoni L, Foulkes AS, Liu Y, Li X, Johnson M, Smith C, Kamarulzaman AB, Montaner J, Mounzer K, Saag M, Cahn P, Cesar C, Krolewiecki A, Sanne I, Montaner LJ. Prioritizing CD4 count monitoring in response to ART in resource-constrained settings: a retrospective application of prediction-based classification. PLoS Med. 2012; 9(4):e1001207. PMID: 22529752.
      Citations: 4     Fields:    Translation:HumansCells
    27. Conradie F, Foulkes AS, Ive P, Yin X, Roussos K, Glencross DK, Lawrie D, Stevens W, Montaner LJ, Sanne I, Azzoni L. Natural killer cell activation distinguishes Mycobacterium tuberculosis-mediated immune reconstitution syndrome from chronic HIV and HIV/MTB coinfection. J Acquir Immune Defic Syndr. 2011 Nov 01; 58(3):309-18. PMID: 21826013.
      Citations: 24     Fields:    Translation:HumansCells
    28. Papasavvas E, Azzoni L, Foulkes A, Violari A, Cotton MF, Pistilli M, Reynolds G, Yin X, Glencross DK, Stevens WS, McIntyre JA, Montaner LJ. Increased microbial translocation in = 180 days old perinatally human immunodeficiency virus-positive infants as compared with human immunodeficiency virus-exposed uninfected infants of similar age. Pediatr Infect Dis J. 2011 Oct; 30(10):877-82. PMID: 21552185.
      Citations: 24     Fields:    Translation:HumansCells
    29. Eliot M, Ferguson J, Reilly MP, Foulkes AS. Ridge regression for longitudinal biomarker data. Int J Biostat. 2011; 7(1):Article 37. PMID: 22049265.
      Citations: 1     Fields:    Translation:Humans
    30. Liu Y, Foulkes AS. Latent variable modeling paradigms for genotype-trait association studies. Biom J. 2011 Sep; 53(5):838-54. PMID: 21887796.
      Citations: 1     Fields:    Translation:HumansCells
    31. Azzoni L, Foulkes AS, Firnhaber C, Yin X, Crowther NJ, Glencross D, Lawrie D, Stevens W, Papasavvas E, Sanne I, Montaner LJ. Metabolic and anthropometric parameters contribute to ART-mediated CD4+ T cell recovery in HIV-1-infected individuals: an observational study. J Int AIDS Soc. 2011 Jul 29; 14:37. PMID: 21801351.
      Citations: 4     Fields:    Translation:HumansCells
    32. Firnhaber C, Azzoni L, Foulkes AS, Gross R, Yin X, Van Amsterdam D, Schulze D, Glencross DK, Stevens W, Hunt G, Morris L, Fox L, Sanne I, Montaner LJ. Randomized trial of time-limited interruptions of protease inhibitor-based antiretroviral therapy (ART) vs. continuous therapy for HIV-1 infection. PLoS One. 2011; 6(6):e21450. PMID: 21738668.
      Citations: 2     Fields:    Translation:Cells
    33. Au K, Lin R, Foulkes AS. Mixture modelling as an exploratory framework for genotype-trait associations. J R Stat Soc Ser C Appl Stat. 2011 05; 60(3):355-375. PMID: 22368304.
      Citations: 1     
    34. Foulkes AS, Au K. R statistical tools for gene discovery. Methods Mol Biol. 2011; 760:73-90. PMID: 21779991.
      Citations:    Fields:    
    35. Azzoni L, Crowther NJ, Firnhaber C, Foulkes AS, Yin X, Glencross D, Gross R, Kaplan MD, Papasavvas E, Schulze D, Stevens W, van der Merwe T, Waisberg R, Sanne I, Montaner LJ. Association between HIV replication and serum leptin levels: an observational study of a cohort of HIV-1-infected South African women. J Int AIDS Soc. 2010 Sep 07; 13:33. PMID: 20822522.
      Citations: 9     Fields:    Translation:HumansCells
    36. Mehta N, Trzmielina S, Nonyane BA, Eliot MN, Lin R, Foulkes AS, McNeal K, Ammann A, Eulalievyolo V, Sullivan JL, Luzuriaga K, Somasundaran M. Low-cost HIV-1 diagnosis and quantification in dried blood spots by real time PCR. PLoS One. 2009 Jun 05; 4(6):e5819. PMID: 19503790.
      Citations: 16     Fields:    Translation:HumansCells
    37. Giri MS, Nebozyhn M, Raymond A, Gekonge B, Hancock A, Creer S, Nicols C, Yousef M, Foulkes AS, Mounzer K, Shull J, Silvestri G, Kostman J, Collman RG, Showe L, Montaner LJ. Circulating monocytes in HIV-1-infected viremic subjects exhibit an antiapoptosis gene signature and virus- and host-mediated apoptosis resistance. J Immunol. 2009 Apr 01; 182(7):4459-70. PMID: 19299747.
      Citations: 48     Fields:    Translation:HumansCells
    38. Papasavvas E, Foulkes A, Li X, Kostman JR, Mounzer KC, Montaner LJ. Evidence of a decrease in CD4 recovery once back on antiretroviral therapy after sequential > or =6 weeks antiretroviral therapy interruptions. J Acquir Immune Defic Syndr. 2009 Mar 01; 50(3):334-5. PMID: 19242262.
      Citations: 1     Fields:    Translation:Humans
    39. Nonyane BA, Foulkes AS. Application of two machine learning algorithms to genetic association studies in the presence of covariates. BMC Genet. 2008 Nov 14; 9:71. PMID: 19014573.
      Citations: 8     Fields:    Translation:Humans
    40. Gross R, Aplenc R, Tenhave T, Foulkes AS, Thakur R, Mosepele M, Barrett JS, Flexner C, Strom BL, Bisson G. Slow efavirenz metabolism genotype is common in Botswana. J Acquir Immune Defic Syndr. 2008 Nov 01; 49(3):336-7. PMID: 18978480.
      Citations: 20     Translation:Humans
    41. Foulkes AS, Yucel R, Li X. A likelihood-based approach to mixed modeling with ambiguity in cluster identifiers. Biostatistics. 2008 Oct; 9(4):635-57. PMID: 18343883.
      Citations: 7     Fields:    Translation:HumansCells
    42. DeMichele A, Gimotty P, Botbyl J, Aplenc R, Colligon T, Foulkes AS, Rebbeck TR. In response to "Drug metabolizing enzyme polymorphisms predict clinical outcome in a node-positive breast cancer cohort". J Clin Oncol. 2007 Dec 10; 25(35):5675-7. PMID: 18065748.
      Citations: 5     Fields:    Translation:Humans
    43. Li X, Foulkes AS, Yucel RM, Rich SM. An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children. Stat Appl Genet Mol Biol. 2007; 6:Article33. PMID: 18052916.
      Citations: 11     Fields:    Translation:HumansAnimals
    44. Chehimi J, Azzoni L, Farabaugh M, Creer SA, Tomescu C, Hancock A, Mackiewicz A, D'Alessandro L, Ghanekar S, Foulkes AS, Mounzer K, Kostman J, Montaner LJ. Baseline viral load and immune activation determine the extent of reconstitution of innate immune effectors in HIV-1-infected subjects undergoing antiretroviral treatment. J Immunol. 2007 Aug 15; 179(4):2642-50. PMID: 17675528.
      Citations: 35     Fields:    Translation:HumansCellsCTClinical Trials
    45. Azzoni L, Chehimi J, Zhou L, Foulkes AS, June R, Maino VC, Landay A, Rinaldo C, Jacobson LP, Montaner LJ. Early and delayed benefits of HIV-1 suppression: timeline of recovery of innate immunity effector cells. AIDS. 2007 Jan 30; 21(3):293-305. PMID: 17255736.
      Citations: 15     Fields:    Translation:HumansCells
    46. Foulkes AS, DeGruttola VG. A resampling-based approach to multiple testing with uncertainty in phase. Int J Biostat. 2007; 3(1):Article 2. PMID: 22550644.
      Citations: 1     Fields:    Translation:HumansCells
    47. Nonyane BA, Foulkes AS. Multiple imputation and random forests (MIRF) for unobservable, high-dimensional data. Int J Biostat. 2007; 3(1):Article 12. PMID: 22550652.
      Citations: 3     Fields:    Translation:HumansCells
    48. Sathiyaseelan J, Goenka R, Parent M, Benson RM, Murphy EA, Fernandes DM, Foulkes AS, Baldwin CL. Treatment of Brucella-susceptible mice with IL-12 increases primary and secondary immunity. Cell Immunol. 2006 Sep; 243(1):1-9. PMID: 17184756.
      Citations: 23     Fields:    Translation:AnimalsCells
    49. Foulkes AS, Wohl DA, Frank I, Puleo E, Restine S, Wolfe ML, Dube MP, Tebas P, Reilly MP. Associations among race/ethnicity, ApoC-III genotypes, and lipids in HIV-1-infected individuals on antiretroviral therapy. PLoS Med. 2006 Mar; 3(3):e52. PMID: 16417409.
      Citations: 37     Fields:    Translation:HumansCells
    50. Papasavvas E, Kostman JR, Thiel B, Pistilli M, Mackiewicz A, Foulkes A, Gross R, Jordan KA, Nixon DF, Grant R, Poulin JF, McCune JM, Mounzer K, Montaner LJ. HIV-1-specific CD4+ T cell responses in chronically HIV-1 infected blippers on antiretroviral therapy in relation to viral replication following treatment interruption. J Clin Immunol. 2006 Jan; 26(1):40-54. PMID: 16418802.
      Citations: 10     Fields:    Translation:HumansCells
    51. DeMichele A, Aplenc R, Botbyl J, Colligan T, Wray L, Klein-Cabral M, Foulkes A, Gimotty P, Glick J, Weber B, Stadtmauer E, Rebbeck TR. Drug-metabolizing enzyme polymorphisms predict clinical outcome in a node-positive breast cancer cohort. J Clin Oncol. 2005 Aug 20; 23(24):5552-9. PMID: 16110016.
      Citations: 15     Fields:    Translation:Humans
    52. Reilly MP, Foulkes AS, Wolfe ML, Rader DJ. Higher order lipase gene association with plasma triglycerides. J Lipid Res. 2005 Sep; 46(9):1914-22. PMID: 15961789.
      Citations: 4     Fields:    Translation:Humans
    53. Zhao JX, Foulkes AS, George EI. Exploratory Bayesian model selection for serial genetics data. Biometrics. 2005 Jun; 61(2):591-9. PMID: 16011709.
      Citations: 3     Fields:    Translation:HumansCells
    54. Papasavvas E, Kostman JR, Mounzer K, Grant RM, Gross R, Gallo C, Azzoni L, Foulkes A, Thiel B, Pistilli M, Mackiewicz A, Shull J, Montaner LJ. Randomized, controlled trial of therapy interruption in chronic HIV-1 infection. PLoS Med. 2004 Dec; 1(3):e64. PMID: 15630469.
      Citations: 34     Fields:    Translation:HumansCells
    55. De Gruttola V, Foulkes AS. Validation and discovery in Markov models of genetics data. Stat Appl Genet Mol Biol. 2004; 3:Article38. PMID: 16646818.
      Citations: 1     Fields: