Sami Oikarinen

InstitutionPirkanmaa Hospital District
AddressTampere
Finland
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    Publication Timeline
    COVID-19 publications
    Bar chart showing 1 Covid-19 publications, with a maximum of 1 publications in January 2021
    All Publications
    Bar chart showing 45 publications over 17 distinct years, with a maximum of 5 publications in 2012 and 2014 and 2017
    These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.

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    Publication Field Summary
    This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
    Publication List
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Hokajärvi AM, Rytkönen A, Tiwari A, Kauppinen A, Oikarinen S, Lehto KM, Kankaanpää A, Gunnar T, Al-Hello H, Blomqvist S, Miettinen IT, Savolainen-Kopra C, Pitkänen T. The detection and stability of the SARS-CoV-2 RNA biomarkers in wastewater influent in Helsinki, Finland. Sci Total Environ. 2021 May 20; 770:145274. PMID: 33513496.
      Citations: 21     Fields:    Translation:HumansPHPublic Health
    2. Sioofy-Khojine AB, Oikarinen S, Honkanen H, Huhtala H, Lehtonen JP, Briese T, Hyöty H. Molecular epidemiology of enteroviruses in young children at increased risk of type 1 diabetes. PLoS One. 2018; 13(9):e0201959. PMID: 30192755.
      Citations: 8     Fields:    Translation:HumansCells
    3. Nurminen N, Lin J, Grönroos M, Puhakka R, Kramna L, Vari HK, Viskari H, Oikarinen S, Roslund M, Parajuli A, Tyni I, Cinek O, Laitinen O, Hyöty H, Sinkkonen A. Nature-derived microbiota exposure as a novel immunomodulatory approach. Future Microbiol. 2018 06 01; 13:737-744. PMID: 29771153.
      Citations: 8     Fields:    Translation:HumansAnimalsCellsPHPublic HealthCTClinical Trials
    4. Sioofy-Khojine AB, Lehtonen J, Nurminen N, Laitinen OH, Oikarinen S, Huhtala H, Pakkanen O, Ruokoranta T, Hankaniemi MM, Toppari J, Vähä-Mäkilä M, Ilonen J, Veijola R, Knip M, Hyöty H. Coxsackievirus B1 infections are associated with the initiation of insulin-driven autoimmunity that progresses to type 1 diabetes. Diabetologia. 2018 05; 61(5):1193-1202. PMID: 29404673.
      Citations: 34     Fields:    Translation:HumansCells
    5. Lin J, Kimura BY, Oikarinen S, Nykter M. Bioinformatics Assembling and Assessment of Novel Coxsackievirus B1 Genome. Methods Mol Biol. 2018; 1838:261-272. PMID: 30129002.
      Citations: 1     Fields:    Translation:HumansCells
    6. Stone VM, Hankaniemi MM, Svedin E, Sioofy-Khojine A, Oikarinen S, Hyöty H, Laitinen OH, Hytönen VP, Flodström-Tullberg M. A Coxsackievirus B vaccine protects against virus-induced diabetes in an experimental mouse model of type 1 diabetes. Diabetologia. 2018 02; 61(2):476-481. PMID: 29151123.
      Citations: 19     Fields:    Translation:AnimalsCells
    7. Lietzen N, An LTT, Jaakkola MK, Kallionpää H, Oikarinen S, Mykkänen J, Knip M, Veijola R, Ilonen J, Toppari J, Hyöty H, Lahesmaa R, Elo LL. Enterovirus-associated changes in blood transcriptomic profiles of children with genetic susceptibility to type 1 diabetes. Diabetologia. 2018 02; 61(2):381-388. PMID: 29119244.
      Citations: 6     Fields:    Translation:HumansCells
    8. Viskari H, Oikarinen S, Hoppu S, Vuorinen T, Huhtala H, Toppari J, Veijola R, Ilonen J, Knip M, Hyöty H. Live attenuated enterovirus vaccine (OPV) is not associated with islet autoimmunity in children with genetic susceptibility to type 1 diabetes: prospective cohort study. Diabetologia. 2018 01; 61(1):203-209. PMID: 28866779.
      Citations: 1     Fields:    Translation:HumansCells
    9. Sillanpää S, Kramna L, Oikarinen S, Sipilä M, Rautiainen M, Aittoniemi J, Laranne J, Hyöty H, Cinek O. Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media. mSphere. 2017 Mar-Apr; 2(2). PMID: 28357413.
      Citations: 16     Fields:    
    10. Honkanen H, Oikarinen S, Nurminen N, Laitinen OH, Huhtala H, Lehtonen J, Ruokoranta T, Hankaniemi MM, Lecouturier V, Almond JW, Tauriainen S, Simell O, Ilonen J, Veijola R, Viskari H, Knip M, Hyöty H. Detection of enteroviruses in stools precedes islet autoimmunity by several months: possible evidence for slowly operating mechanisms in virus-induced autoimmunity. Diabetologia. 2017 03; 60(3):424-431. PMID: 28070615.
      Citations: 34     Fields:    Translation:HumansCells
    11. Cinek O, Kramna L, Lin J, Oikarinen S, Kolarova K, Ilonen J, Simell O, Veijola R, Autio R, Hyöty H. Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls. Pediatr Diabetes. 2017 Nov; 18(7):588-598. PMID: 27860030.
      Citations: 13     Fields:    Translation:HumansCells
    12. Seppälä E, Sillanpää S, Nurminen N, Huhtala H, Toppari J, Ilonen J, Veijola R, Knip M, Sipilä M, Laranne J, Oikarinen S, Hyöty H. Human enterovirus and rhinovirus infections are associated with otitis media in a prospective birth cohort study. J Clin Virol. 2016 12; 85:1-6. PMID: 27780081.
      Citations: 3     Fields:    Translation:HumansCells
    13. Sillanpää S, Oikarinen S, Sipilä M, Kramna L, Rautiainen M, Huhtala H, Aittoniemi J, Laranne J, Hyöty H, Cinek O. Moraxella catarrhalis Might Be More Common than Expected in Acute Otitis Media in Young Finnish Children. J Clin Microbiol. 2016 09; 54(9):2373-9. PMID: 27413187.
      Citations: 8     Fields:    Translation:HumansCells
    14. Laiho JE, Oikarinen M, Richardson SJ, Frisk G, Nyalwidhe J, Burch TC, Morris MA, Oikarinen S, Pugliese A, Dotta F, Campbell-Thompson M, Nadler J, Morgan NG, Hyöty H. Relative sensitivity of immunohistochemistry, multiple reaction monitoring mass spectrometry, in situ hybridization and PCR to detect Coxsackievirus B1 in A549 cells. J Clin Virol. 2016 Apr; 77:21-8. PMID: 26875099.
      Citations: 9     Fields:    Translation:HumansCells
    15. Blazevic V, Malm M, Salminen M, Oikarinen S, Hyöty H, Veijola R, Vesikari T. Multiple consecutive norovirus infections in the first 2 years of life. Eur J Pediatr. 2015 Dec; 174(12):1679-83. PMID: 26152345.
      Citations: 10     Fields:    Translation:HumansCells
    16. Laiho JE, Oikarinen S, Oikarinen M, Larsson PG, Stone VM, Hober D, Oberste S, Flodström-Tullberg M, Isola J, Hyöty H. Application of bioinformatics in probe design enables detection of enteroviruses on different taxonomic levels by advanced in situ hybridization technology. J Clin Virol. 2015 Aug; 69:165-71. PMID: 26209400.
      Citations: 7     Fields:    Translation:HumansAnimalsCells
    17. Nurminen N, Juuti R, Oikarinen S, Fan YM, Lehto KM, Mangani C, Maleta K, Ashorn P, Hyöty H. High-throughput multiplex quantitative polymerase chain reaction method for Giardia lamblia and Cryptosporidium species detection in stool samples. Am J Trop Med Hyg. 2015 Jun; 92(6):1222-6. PMID: 25918202.
      Citations: 3     Fields:    Translation:HumansAnimals
    18. Kramná L, Kolárová K, Oikarinen S, Pursiheimo JP, Ilonen J, Simell O, Knip M, Veijola R, Hyöty H, Cinek O. Gut virome sequencing in children with early islet autoimmunity. Diabetes Care. 2015 May; 38(5):930-3. PMID: 25678103.
      Citations: 22     Fields:    Translation:HumansCells
    19. Krogvold L, Edwin B, Buanes T, Frisk G, Skog O, Anagandula M, Korsgren O, Undlien D, Eike MC, Richardson SJ, Leete P, Morgan NG, Oikarinen S, Oikarinen M, Laiho JE, Hyöty H, Ludvigsson J, Hanssen KF, Dahl-Jørgensen K. Detection of a low-grade enteroviral infection in the islets of langerhans of living patients newly diagnosed with type 1 diabetes. Diabetes. 2015 May; 64(5):1682-7. PMID: 25422108.
      Citations: 107     Fields:    Translation:HumansCells
    20. Sillanpää S, Oikarinen S, Sipilä M, Seppälä E, Nurminen N, Rautiainen M, Laranne J, Hyöty H. Human parechovirus as a minor cause of acute otitis media in children. J Clin Virol. 2015 Jan; 62:106-9. PMID: 25464964.
      Citations: 3     Fields:    Translation:HumansCells
    21. Cinek O, Stene LC, Kramna L, Tapia G, Oikarinen S, Witsø E, Rasmussen T, Torjesen PA, Hyöty H, Rønningen KS. Enterovirus RNA in longitudinal blood samples and risk of islet autoimmunity in children with a high genetic risk of type 1 diabetes: the MIDIA study. Diabetologia. 2014 Oct; 57(10):2193-200. PMID: 25047648.
      Citations: 12     Fields:    Translation:HumansCells
    22. Hämäläinen S, Nurminen N, Ahlfors H, Oikarinen S, Sioofy-Khojine AB, Frisk G, Oberste MS, Lahesmaa R, Pesu M, Hyöty H. Coxsackievirus B1 reveals strain specific differences in plasmacytoid dendritic cell mediated immunogenicity. J Med Virol. 2014 Aug; 86(8):1412-20. PMID: 24616040.
      Citations: 10     Fields:    Translation:HumansCells
    23. Koho T, Koivunen MR, Oikarinen S, Kummola L, Mäkinen S, Mähönen AJ, Sioofy-Khojine A, Marjomäki V, Kazmertsuk A, Junttila I, Kulomaa MS, Hyöty H, Hytönen VP, Laitinen OH. Coxsackievirus B3 VLPs purified by ion exchange chromatography elicit strong immune responses in mice. Antiviral Res. 2014 Apr; 104:93-101. PMID: 24485896.
      Citations: 10     Fields:    Translation:AnimalsCellsPHPublic Health
    24. Oikarinen S, Tauriainen S, Hober D, Lucas B, Vazeou A, Sioofy-Khojine A, Bozas E, Muir P, Honkanen H, Ilonen J, Knip M, Keskinen P, Saha MT, Huhtala H, Stanway G, Bartsocas C, Ludvigsson J, Taylor K, Hyöty H. Virus antibody survey in different European populations indicates risk association between coxsackievirus B1 and type 1 diabetes. Diabetes. 2014 Feb; 63(2):655-62. PMID: 24009257.
      Citations: 59     Fields:    Translation:HumansCells
    25. Laitinen OH, Honkanen H, Pakkanen O, Oikarinen S, Hankaniemi MM, Huhtala H, Ruokoranta T, Lecouturier V, André P, Harju R, Virtanen SM, Lehtonen J, Almond JW, Simell T, Simell O, Ilonen J, Veijola R, Knip M, Hyöty H. Coxsackievirus B1 is associated with induction of ß-cell autoimmunity that portends type 1 diabetes. Diabetes. 2014 Feb; 63(2):446-55. PMID: 23974921.
      Citations: 89     Fields:    Translation:HumansAnimalsCells
    26. Khan J, Nordback I, Seppänen H, Lappalainen-Lehto R, Järvinen S, Oikarinen S, Tauriainen S, Räty S, Hyöty H, Sand J. Is alcoholic pancreatitis associated with enteroviral infection? World J Gastroenterol. 2013 Jun 28; 19(24):3819-23. PMID: 23840120.
      Citations:    Fields:    Translation:HumansCells
    27. Nurminen N, Oikarinen S, Hyöty H. Virus infections as potential targets of preventive treatments for type 1 diabetes. Rev Diabet Stud. 2012; 9(4):260-71. PMID: 23804265.
      Citations: 8     Fields:    Translation:HumansAnimalsCells
    28. Honkanen H, Oikarinen S, Peltonen P, Simell O, Ilonen J, Veijola R, Knip M, Hyöty H. Human rhinoviruses including group C are common in stool samples of young Finnish children. J Clin Virol. 2013 Mar; 56(3):250-4. PMID: 23273491.
      Citations: 13     Fields:    Translation:HumansCells
    29. Honkanen H, Oikarinen S, Pakkanen O, Ruokoranta T, Pulkki MM, Laitinen OH, Tauriainen S, Korpela S, Lappalainen M, Vuorinen T, Haapala AM, Veijola R, Simell O, Ilonen J, Knip M, Hyöty H. Human enterovirus 71 strains in the background population and in hospital patients in Finland. J Clin Virol. 2013 Apr; 56(4):348-53. PMID: 23261080.
      Citations: 14     Fields:    Translation:HumansCells
    30. Kolehmainen P, Oikarinen S, Koskiniemi M, Simell O, Ilonen J, Knip M, Hyöty H, Tauriainen S. Human parechoviruses are frequently detected in stool of healthy Finnish children. J Clin Virol. 2012 Jun; 54(2):156-61. PMID: 22406272.
      Citations: 19     Fields:    Translation:HumansCells
    31. Oikarinen M, Tauriainen S, Oikarinen S, Honkanen T, Collin P, Rantala I, Mäki M, Kaukinen K, Hyöty H. Type 1 diabetes is associated with enterovirus infection in gut mucosa. Diabetes. 2012 Mar; 61(3):687-91. PMID: 22315304.
      Citations: 54     Fields:    Translation:HumansCells
    32. Salur L, Oikarinen S, Tauriainen S, Mandel M, Hyöty H, Uibo R. Enterovirus infections in young infants: are children still protected by maternal antibodies? Hum Vaccin. 2011 Sep; 7(9):966-71. PMID: 21860257.
      Citations: 4     Fields:    Translation:HumansCells
    33. Oikarinen S, Martiskainen M, Tauriainen S, Huhtala H, Ilonen J, Veijola R, Simell O, Knip M, Hyöty H. Enterovirus RNA in blood is linked to the development of type 1 diabetes. Diabetes. 2011 Jan; 60(1):276-9. PMID: 20943747.
      Citations: 74     Fields:    Translation:HumansCells
    34. Stene LC, Oikarinen S, Hyöty H, Barriga KJ, Norris JM, Klingensmith G, Hutton JC, Erlich HA, Eisenbarth GS, Rewers M. Enterovirus infection and progression from islet autoimmunity to type 1 diabetes: the Diabetes and Autoimmunity Study in the Young (DAISY). Diabetes. 2010 Dec; 59(12):3174-80. PMID: 20858685.
      Citations: 100     Fields:    Translation:Humans
    35. Samuelsson U, Oikarinen S, Hyöty H, Ludvigsson J. Low zinc in drinking water is associated with the risk of type 1 diabetes in children. Pediatr Diabetes. 2011 May; 12(3 Pt 1):156-64. PMID: 20920146.
      Citations: 17     Fields:    Translation:HumansCellsPHPublic Health
    36. Tauriainen S, Oikarinen S, Oikarinen M, Hyöty H. Enteroviruses in the pathogenesis of type 1 diabetes. Semin Immunopathol. 2011 Jan; 33(1):45-55. PMID: 20424841.
      Citations: 45     Fields:    Translation:HumansAnimalsCells
    37. Oikarinen S, Tauriainen S, Viskari H, Simell O, Knip M, Virtanen S, Hyöty H. PCR inhibition in stool samples in relation to age of infants. J Clin Virol. 2009 Mar; 44(3):211-4. PMID: 19196549.
      Citations: 23     Fields:    Translation:HumansCells
    38. Tauriainen S, Oikarinen S, Taimen K, Laranne J, Sipilä M, Lönnrot M, Ilonen J, Simell O, Knip M, Hyöty H. Temporal relationship between human parechovirus 1 infection and otitis media in young children. J Infect Dis. 2008 Jul 01; 198(1):35-40. PMID: 18462136.
      Citations: 5     Fields:    Translation:HumansCells
    39. Elfving M, Svensson J, Oikarinen S, Jonsson B, Olofsson P, Sundkvist G, Lindberg B, Lernmark A, Hyöty H, Ivarsson SA. Maternal enterovirus infection during pregnancy as a risk factor in offspring diagnosed with type 1 diabetes between 15 and 30 years of age. Exp Diabetes Res. 2008; 2008:271958. PMID: 18670622.
      Citations: 16     Fields:    Translation:HumansCells
    40. Tauriainen S, Martiskainen M, Oikarinen S, Lönnrot M, Viskari H, Ilonen J, Simell O, Knip M, Hyöty H. Human parechovirus 1 infections in young children--no association with type 1 diabetes. J Med Virol. 2007 Apr; 79(4):457-62. PMID: 17311340.
      Citations: 18     Fields:    Translation:HumansCells
    41. Williams CH, Oikarinen S, Tauriainen S, Salminen K, Hyöty H, Stanway G. Molecular analysis of an echovirus 3 strain isolated from an individual concurrently with appearance of islet cell and IA-2 autoantibodies. J Clin Microbiol. 2006 Feb; 44(2):441-8. PMID: 16455897.
      Citations: 13     Fields:    Translation:HumansCells
    42. Tauriainen S, Dadu E, Oikarinen M, Oikarinen S, Hyöty H. Amplifying control RNA for RT-PCR applications by nucleic acid sequence based amplification (NASBA). J Virol Methods. 2006 Mar; 132(1-2):222-6. PMID: 16318878.
      Citations: 2     Fields:    Translation:Cells
    43. Kuittinen H, de Haan AA, Vogl C, Oikarinen S, Leppälä J, Koch M, Mitchell-Olds T, Langley CH, Savolainen O. Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana. Genetics. 2004 Nov; 168(3):1575-84. PMID: 15579708.
      Citations: 71     Fields:    Translation:Animals
    44. Kares S, Lönnrot M, Vuorinen P, Oikarinen S, Taurianen S, Hyöty H. Real-time PCR for rapid diagnosis of entero- and rhinovirus infections using LightCycler. J Clin Virol. 2004 Feb; 29(2):99-104. PMID: 14747028.
      Citations: 26     Fields:    Translation:HumansCells
    45. Kärkkäinen K, Kuittinen H, van Treuren R, Vogl C, Oikarinen S, Savolainen O. GENETIC BASIS OF INBREEDING DEPRESSION IN ARABIS PETRAEA. Evolution. 1999 Oct; 53(5):1354-1365. PMID: 28565542.
      Citations: 9     Fields: