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Edward C Holmes
Institution
the University of Sydney
Address
Australia
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Publication Timeline
COVID-19 publications
All Publications
These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.
To see the data from both graphs as text,
click here
.
Year
Publications
2002
10
2003
13
2004
17
2005
13
2006
22
2007
25
2008
20
2009
20
2010
26
2011
24
2012
17
2013
32
2014
31
2015
29
2016
29
2017
30
2018
32
2019
11
2020
22
2021
15
These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.
To return to the graphs,
click here
.
Publication Field Summary
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text,
click here
.
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text,
click here
.
Publication List
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
Show:
All coronarirus related publications
|
Covid-19 specific publications
|
All publications
Sort By:
Newest
|
Oldest
|
Most Cited
|
Most Discussed
PMC Citations
indicate the number of times the publication was cited by articles in PubMed Central, and the
Altmetric
score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.)
Fields
are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation
tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
Neira V
,
Brito B
,
Agüero B
,
Berrios F
,
Valdés V
,
Gutierrez A
,
Ariyama N
,
Espinoza P
,
Retamal P
,
Holmes EC
,
Gonzalez-Reiche AS
,
Khan Z
,
van de Guchte A
,
Dutta J
,
Miorin L
,
Kehrer T
,
Galarce N
,
Almonacid LI
,
Levican J
,
van Bakel H
,
García-Sastre A
,
Medina RA
. A household case evidences shorter shedding of SARS-CoV-2 in naturally infected cats compared to their human owners. Emerg Microbes Infect. 2021 Dec; 10(1):376-383.
PMID:
33317424
.
Citations:
25
Fields:
Com
Communicable Diseases
Translation:
Humans
Animals
Wagner CE
,
Saad-Roy CM
,
Morris SE
,
Baker RE
,
Mina MJ
,
Farrar J
,
Holmes EC
,
Pybus OG
,
Graham AL
,
Emanuel EJ
,
Levin SA
,
Metcalf CJE
,
Grenfell BT
. Vaccine nationalism and the dynamics and control of SARS-CoV-2. Science. 2021 09 24; 373(6562):eabj7364.
PMID:
34404735
.
Citations:
6
Fields:
Sci
Science
Translation:
Humans
Telenti A
,
Arvin A
,
Corey L
,
Corti D
,
Diamond MS
,
García-Sastre A
,
Garry RF
,
Holmes EC
,
Pang PS
,
Virgin HW
. After the pandemic: perspectives on the future trajectory of COVID-19. Nature. 2021 08; 596(7873):495-504.
PMID:
34237771
.
Citations:
7
Fields:
Sci
Science
Translation:
Humans
Animals
PH
Public Health
Konings F
,
Perkins MD
,
Kuhn JH
,
Pallen MJ
,
Alm EJ
,
Archer BN
,
Barakat A
,
Bedford T
,
Bhiman JN
,
Caly L
,
Carter LL
,
Cullinane A
,
de Oliveira T
,
Druce J
,
El Masry I
,
Evans R
,
Gao GF
,
Gorbalenya AE
,
Hamblion E
,
Herring BL
,
Hodcroft E
,
Holmes EC
,
Kakkar M
,
Khare S
,
Koopmans MPG
,
Korber B
,
Leite J
,
MacCannell D
,
Marklewitz M
,
Maurer-Stroh S
,
Rico JAM
,
Munster VJ
,
Neher R
, Munnink BO,
Pavlin BI
,
Peiris M
,
Poon L
,
Pybus O
,
Rambaut A
,
Resende P
,
Subissi L
,
Thiel V
,
Tong S
,
van der Werf S
,
von Gottberg A
,
Ziebuhr J
,
Van Kerkhove MD
. SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse. Nat Microbiol. 2021 07; 6(7):821-823.
PMID:
34108654
.
Citations:
24
Fields:
Mic
Microbiology
Par
Parasitology
Vir
Virology
Translation:
Humans
Zhou H
,
Ji J
,
Chen X
,
Bi Y
,
Li J
,
Wang Q
,
Hu T
,
Song H
,
Zhao R
,
Chen Y
,
Cui M
,
Zhang Y
,
Hughes AC
,
Holmes EC
,
Shi W
. Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses. Cell. 2021 08 19; 184(17):4380-4391.e14.
PMID:
34147139
.
Citations:
32
Fields:
Cel
Cell Biology
Translation:
Humans
Animals
Cells
Chappell JG
,
Tsoleridis T
,
Clark G
,
Berry L
,
Holmes N
,
Moore C
,
Carlile M
,
Sang F
,
Debebe BJ
,
Wright V
,
Irving WL
,
Thomson BJ
,
Boswell TCJ
,
Willingham I
,
Joseph A
,
Smith W
,
Khakh M
,
Fleming VM
,
Lister MM
,
Howson-Wells HC
,
Holmes EC
,
Loose MW
,
Ball JK
,
McClure CP
. Retrospective screening of routine respiratory samples revealed undetected community transmission and missed intervention opportunities for SARS-CoV-2 in the United Kingdom. J Gen Virol. 2021 06; 102(6).
PMID:
34130773
.
Citations:
3
Fields:
Vir
Virology
Translation:
Humans
PH
Public Health
O'Toole Á
,
Hill V
,
Pybus OG
,
Watts A
,
Bogoch II
,
Khan K
,
Messina JP
,
Tegally H
, Lessells RR,
Giandhari J
,
Pillay S
,
Tumedi KA
,
Nyepetsi G
,
Kebabonye M
,
Matsheka M
,
Mine M
,
Tokajian S
,
Hassan H
,
Salloum T
,
Merhi G
,
Koweyes J
,
Geoghegan JL
,
de Ligt J
,
Ren X
,
Storey M
,
Freed NE
,
Pattabiraman C
,
Prasad P
,
Desai AS
,
Vasanthapuram R
,
Schulz TF
,
Steinbrück L
,
Stadler T
,
Parisi A
,
Bianco A
,
García de Viedma D
,
Buenestado-Serrano S
,
Borges V
,
Isidro J
,
Duarte S
,
Gomes JP
,
Zuckerman NS
,
Mandelboim M
,
Mor O
,
Seemann T
,
Arnott A
,
Draper J
,
Gall M
,
Rawlinson W
,
Deveson I
,
Schlebusch S
,
McMahon J
,
Leong L
,
Lim CK
,
Chironna M
,
Loconsole D
,
Bal A
,
Josset L
,
Holmes E
,
St George K
,
Lasek-Nesselquist E
,
Sikkema RS
, et al. Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2. Wellcome Open Res. 2021; 6:121.
PMID:
34095513
.
Citations:
25
Geoghegan JL
,
Douglas J
,
Ren X
,
Storey M
,
Hadfield J
,
Silander OK
,
Freed NE
,
Jelley L
,
Jefferies S
,
Sherwood J
,
Paine S
,
Huang S
,
Sporle A
,
Baker MG
,
Murdoch DR
,
Drummond AJ
,
Welch D
,
Simpson CR
,
French N
,
Holmes EC
,
de Ligt J
. Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand. Emerg Infect Dis. 2021 05; 27(5):1317-1322.
PMID:
33900175
.
Citations:
6
Fields:
Com
Communicable Diseases
Translation:
Humans
PH
Public Health
Di Giallonardo F
,
Puglia I
,
Curini V
,
Cammà C
,
Mangone I
,
Calistri P
,
Cobbin JCA
,
Holmes EC
,
Lorusso A
. Emergence and Spread of SARS-CoV-2 Lineages B.1.1.7 and P.1 in Italy. Viruses. 2021 04 29; 13(5).
PMID:
33946747
.
Citations:
12
Fields:
Vir
Virology
Translation:
Humans
PH
Public Health
Saad-Roy CM
,
Morris SE
,
Metcalf CJE
,
Mina MJ
,
Baker RE
,
Farrar J
,
Holmes EC
,
Pybus OG
,
Graham AL
,
Levin SA
,
Grenfell BT
,
Wagner CE
. Partial immunity and SARS-CoV-2 mutations-Response. Science. 2021 04 23; 372(6540):354-355.
PMID:
33888633
.
Citations:
2
Fields:
Sci
Science
Translation:
Humans
Yang R
,
Peng J
,
Zhai J
,
Xiao K
,
Zhang X
,
Li X
,
Chen X
,
Chen ZJ
,
Holmes EC
,
Irwin DM
,
Shan F
,
Shen X
,
Chen W
,
Shen Y
. Pathogenicity and transmissibility of a novel respirovirus isolated from a Malayan pangolin. J Gen Virol. 2021 04; 102(4).
PMID:
33843572
.
Citations:
Fields:
Vir
Virology
Translation:
Animals
Cells
Hu T
,
Li J
,
Zhou H
,
Li C
,
Holmes EC
,
Shi W
. Bioinformatics resources for SARS-CoV-2 discovery and surveillance. Brief Bioinform. 2021 03 22; 22(2):631-641.
PMID:
33416890
.
Citations:
3
Fields:
Com
Computational Biology
Translation:
Humans
PH
Public Health
Saad-Roy CM
,
Morris SE
,
Metcalf CJE
,
Mina MJ
,
Baker RE
,
Farrar J
,
Holmes EC
,
Pybus OG
,
Graham AL
,
Levin SA
,
Grenfell BT
,
Wagner CE
. Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes. Science. 2021 04 23; 372(6540):363-370.
PMID:
33688062
.
Citations:
29
Fields:
Sci
Science
Translation:
Humans
PH
Public Health
Rambaut A
,
Holmes EC
,
O'Toole Á
,
Hill V
,
McCrone JT
,
Ruis C
,
du Plessis L
,
Pybus OG
. Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Nat Microbiol. 2021 03; 6(3):415.
PMID:
33514928
.
Citations:
19
Fields:
Mic
Microbiology
Par
Parasitology
Vir
Virology
Translation:
Humans
Swadi T
,
Geoghegan JL
,
Devine T
,
McElnay C
,
Sherwood J
,
Shoemack P
,
Ren X
,
Storey M
,
Jefferies S
,
Smit E
,
Hadfield J
,
Kenny A
,
Jelley L
,
Sporle A
,
McNeill A
,
Reynolds GE
,
Mouldey K
,
Lowe L
,
Sonder G
,
Drummond AJ
,
Huang S
,
Welch D
,
Holmes EC
,
French N
,
Simpson CR
,
de Ligt J
. Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing. Emerg Infect Dis. 2021 03; 27(3):687-693.
PMID:
33400642
.
Citations:
15
Fields:
Com
Communicable Diseases
Translation:
Humans
PH
Public Health
Di Giallonardo F
,
Duchene S
,
Puglia I
,
Curini V
,
Profeta F
,
Cammà C
,
Marcacci M
,
Calistri P
,
Holmes EC
,
Lorusso A
. Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy. Viruses. 2020 12 14; 12(12).
PMID:
33327566
.
Citations:
10
Fields:
Vir
Virology
Translation:
Humans
Chen YM
,
Zheng Y
,
Yu Y
,
Wang Y
,
Huang Q
,
Qian F
,
Sun L
,
Song ZG
,
Chen Z
,
Feng J
,
An Y
,
Yang J
,
Su Z
,
Sun S
,
Dai F
,
Chen Q
,
Lu Q
,
Li P
,
Ling Y
,
Yang Z
,
Tang H
,
Shi L
,
Jin L
,
Holmes EC
,
Ding C
,
Zhu TY
,
Zhang YZ
. Blood molecular markers associated with COVID-19 immunopathology and multi-organ damage. EMBO J. 2020 12 15; 39(24):e105896.
PMID:
33140861
.
Citations:
16
Fields:
Bio
Biotechnology
Mol
Molecular Biology
Translation:
Humans
Geoghegan JL
,
Ren X
,
Storey M
,
Hadfield J
,
Jelley L
,
Jefferies S
,
Sherwood J
,
Paine S
,
Huang S
,
Douglas J
,
Mendes FK
,
Sporle A
,
Baker MG
,
Murdoch DR
,
French N
,
Simpson CR
,
Welch D
,
Drummond AJ
,
Holmes EC
, Duchêne S,
de Ligt J
. Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand. Nat Commun. 2020 12 11; 11(1):6351.
PMID:
33311501
.
Citations:
34
Fields:
Bio
Biology
Sci
Science
Translation:
Humans
PH
Public Health
Zhou H
,
Li C
,
Hu T
,
Liu T
,
Ni N
,
Chen W
,
Zhao H
,
Ruan S
,
Li J
,
Wu H
,
François S
,
Pybus OG
,
Holmes EC
,
Kang D
,
Hou P
,
Shi W
. Total infectomes of 162 SARS-CoV-2 cases using meta-transcriptomic sequencing. J Infect. 2021 Jan; 82(1):e44-e48.
PMID:
33307139
.
Citations:
3
Fields:
Com
Communicable Diseases
Translation:
Humans
Animals
Cells
Xavier J
,
Giovanetti M
,
Adelino T
,
Fonseca V
,
Barbosa da Costa AV
,
Ribeiro AA
,
Felicio KN
,
Duarte CG
,
Ferreira Silva MV
,
Salgado Á
,
Lima MT
,
de Jesus R
,
Fabri A
,
Soares Zoboli CF
,
Souza Santos TG
,
Iani F
,
Ciccozzi M
,
Bispo de Filippis AM
,
Teixeira de Siqueira MAM
,
de Abreu AL
,
de Azevedo V
,
Ramalho DB
,
Campelo de Albuquerque CF
,
de Oliveira T
,
Holmes EC
,
Lourenço J
,
Junior Alcantara LC
,
Assunção Oliveira MA
. The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing. Emerg Microbes Infect. 2020 Dec; 9(1):1824-1834.
PMID:
32726185
.
Citations:
15
Fields:
Com
Communicable Diseases
Translation:
Humans
Cells
PH
Public Health
Di Teodoro G
,
Valleriani F
,
Puglia I
,
Monaco F
,
Di Pancrazio C
,
Luciani M
,
Krasteva I
,
Petrini A
,
Marcacci M
,
D'Alterio N
,
Curini V
,
Iorio M
,
Migliorati G
,
Di Domenico M
,
Morelli D
,
Calistri P
,
Savini G
,
Decaro N
,
Holmes EC
,
Lorusso A
. SARS-CoV-2 replicates in respiratory ex vivo organ cultures of domestic ruminant species. Vet Microbiol. 2021 Jan; 252:108933.
PMID:
33278734
.
Citations:
17
Fields:
Mic
Microbiology
Vet
Veterinary Medicine
Translation:
Animals
Wang W
,
Lin XD
,
Zhang HL
,
Wang MR
,
Guan XQ
,
Holmes EC
,
Zhang YZ
. Extensive genetic diversity and host range of rodent-borne coronaviruses. Virus Evol. 2020 Jul; 6(2):veaa078.
PMID:
33318860
.
Citations:
7
Zhou H
,
Chen X
,
Hu T
,
Li J
,
Song H
,
Liu Y
,
Wang P
,
Liu D
,
Yang J
,
Holmes EC
,
Hughes AC
,
Bi Y
,
Shi W
. A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein. Curr Biol. 2020 Oct 05; 30(19):3896.
PMID:
33022232
.
Citations:
17
Fields:
Bio
Biology
Song ZG
,
Chen YM
,
Wu F
,
Xu L
,
Wang BF
,
Shi L
,
Chen X
,
Dai FH
,
She JL
,
Chen JM
,
Holmes EC
,
Zhu TY
,
Zhang YZ
. Identifying the Risk of SARS-CoV-2 Infection and Environmental Monitoring in Airborne Infectious Isolation Rooms (AIIRs). Virol Sin. 2020 Dec; 35(6):785-792.
PMID:
32986229
.
Citations:
1
Fields:
Vir
Virology
Translation:
Humans
PH
Public Health
Wille M
,
Holmes EC
. Wild birds as reservoirs for diverse and abundant gamma- and deltacoronaviruses. FEMS Microbiol Rev. 2020 09 01; 44(5):631-644.
PMID:
32672814
.
Citations:
14
Fields:
Mic
Microbiology
Translation:
Animals
Cells
Pollock DD
,
Castoe TA
,
Perry BW
,
Lytras S
,
Wade KJ
,
Robertson DL
,
Holmes EC
,
Boni MF
,
Kosakovsky Pond SL
,
Parry R
,
Carlton EJ
,
Wood JLN
,
Pennings PS
,
Goldstein RA
. Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2. Mol Biol Evol. 2020 09 01; 37(9):2706-2710.
PMID:
32658964
.
Citations:
7
Fields:
Mol
Molecular Biology
Translation:
Humans
Animals
Cells
PH
Public Health
Rambaut A
,
Holmes EC
,
O'Toole Á
,
Hill V
,
McCrone JT
,
Ruis C
,
du Plessis L
,
Pybus OG
. A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology. Nat Microbiol. 2020 11; 5(11):1403-1407.
PMID:
32669681
.
Citations:
560
Fields:
Mic
Microbiology
Par
Parasitology
Vir
Virology
Translation:
Humans
Cells
PH
Public Health
Rockett RJ
,
Arnott A
,
Lam C
,
Sadsad R
,
Timms V
,
Gray KA
,
Eden JS
,
Chang S
,
Gall M
,
Draper J
,
Sim EM
,
Bachmann NL
,
Carter I
,
Basile K
,
Byun R
,
O'Sullivan MV
,
O'Sullivan MV
,
Chen SC
,
Maddocks S
,
Sorrell TC
,
Dwyer DE
,
Holmes EC
,
Kok J
,
Prokopenko M
,
Sintchenko V
. Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling. Nat Med. 2020 09; 26(9):1398-1404.
PMID:
32647358
.
Citations:
85
Fields:
Med
Medicine (General)
Mol
Molecular Biology
Translation:
Humans
Cells
PH
Public Health
Zhou H
,
Chen X
,
Hu T
,
Li J
,
Song H
,
Liu Y
,
Wang P
,
Liu D
,
Yang J
,
Holmes EC
,
Hughes AC
,
Bi Y
,
Shi W
. A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein. Curr Biol. 2020 06 08; 30(11):2196-2203.e3.
PMID:
32416074
.
Citations:
177
Fields:
Bio
Biology
Translation:
Animals
Cells
Eden JS
,
Rockett R
,
Carter I
,
Rahman H
,
de Ligt J
,
Hadfield J
,
Storey M
,
Ren X
,
Tulloch R
,
Basile K
,
Wells J
,
Byun R
,
Gilroy N
,
O'Sullivan MV
,
O'Sullivan MV
,
Sintchenko V
,
Chen SC
,
Maddocks S
,
Sorrell TC
,
Holmes EC
,
Dwyer DE
,
Kok J
. An emergent clade of SARS-CoV-2 linked to returned travellers from Iran. Virus Evol. 2020 Jan; 6(1):veaa027.
PMID:
32296544
.
Citations:
55
Grubaugh ND
,
Petrone ME
,
Holmes EC
. We shouldn't worry when a virus mutates during disease outbreaks. Nat Microbiol. 2020 04; 5(4):529-530.
PMID:
32071422
.
Citations:
48
Fields:
Mic
Microbiology
Par
Parasitology
Vir
Virology
Translation:
Humans
Animals
Cells
PH
Public Health
Andersen KG
,
Rambaut A
,
Lipkin WI
,
Holmes EC
,
Garry RF
. The proximal origin of SARS-CoV-2. Nat Med. 2020 04; 26(4):450-452.
PMID:
32284615
.
Citations:
1400
Fields:
Med
Medicine (General)
Mol
Molecular Biology
Translation:
Humans
Animals
Cells
PH
Public Health
Wu F
,
Zhao S
,
Yu B
,
Chen YM
,
Wang W
,
Song ZG
,
Hu Y
,
Tao ZW
,
Tian JH
,
Pei YY
,
Yuan ML
,
Zhang YL
,
Dai FH
,
Liu Y
,
Wang QM
,
Zheng JJ
,
Xu L
,
Holmes EC
,
Zhang YZ
. Author Correction: A new coronavirus associated with human respiratory disease in China. Nature. 2020 04; 580(7803):E7.
PMID:
32296181
.
Citations:
58
Fields:
Sci
Science
Lam TT
,
Jia N
,
Zhang YW
,
Shum MH
,
Jiang JF
,
Zhu HC
,
Tong YG
,
Shi YX
,
Ni XB
,
Liao YS
,
Li WJ
,
Jiang BG
,
Wei W
,
Yuan TT
,
Zheng K
,
Cui XM
,
Li J
,
Pei GQ
,
Qiang X
,
Cheung WY
,
Li LF
,
Sun FF
,
Qin S
,
Huang JC
,
Leung GM
,
Holmes EC
,
Hu YL
,
Guan Y
,
Cao WC
. Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins. Nature. 2020 07; 583(7815):282-285.
PMID:
32218527
.
Citations:
575
Fields:
Sci
Science
Translation:
Humans
Animals
Cells
PH
Public Health
Zhang YZ
,
Holmes EC
. A Genomic Perspective on the Origin and Emergence of SARS-CoV-2. Cell. 2020 Apr 16; 181(2):223-227.
PMID:
32220310
.
Citations:
261
Fields:
Cel
Cell Biology
Translation:
Animals
Cells
PH
Public Health
Wu F
,
Zhao S
,
Yu B
,
Chen YM
,
Wang W
,
Song ZG
,
Hu Y
,
Tao ZW
,
Tian JH
,
Pei YY
,
Yuan ML
,
Zhang YL
,
Dai FH
,
Liu Y
,
Wang QM
,
Zheng JJ
,
Xu L
,
Holmes EC
,
Zhang YZ
. A new coronavirus associated with human respiratory disease in China. Nature. 2020 03; 579(7798):265-269.
PMID:
32015508
.
Citations:
3001
Fields:
Sci
Science
Translation:
Humans
Cells
Lu R
,
Zhao X
,
Li J
,
Niu P
,
Yang B
,
Wu H
,
Wang W
,
Song H
,
Huang B
,
Zhu N
,
Bi Y
,
Ma X
,
Zhan F
,
Wang L
,
Hu T
,
Zhou H
,
Hu Z
,
Zhou W
,
Zhao L
,
Chen J
,
Meng Y
,
Wang J
,
Lin Y
,
Yuan J
,
Xie Z
,
Ma J
,
Liu WJ
,
Wang D
,
Xu W
,
Holmes EC
,
Gao GF
,
Wu G
,
Chen W
,
Shi W
,
Tan W
. Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding. Lancet. 2020 02 22; 395(10224):565-574.
PMID:
32007145
.
Citations:
3751
Fields:
Med
Medicine (General)
Translation:
Humans
Cells
Wille M
,
Shi M
, Klaassen M,
Hurt AC
,
Holmes EC
. Virome heterogeneity and connectivity in waterfowl and shorebird communities. ISME J. 2019 10; 13(10):2603-2616.
PMID:
31239538
.
Citations:
23
Fields:
Env
Environmental Health
Mic
Microbiology
Translation:
Animals
Cells
Tsoleridis T
,
Chappell JG
, Onianwa O,
Marston DA
,
Fooks AR
,
Monchatre-Leroy E
, Umhang G,
Müller MA
,
Drexler JF
,
Drosten C
, Tarlinton RE,
McClure CP
,
Holmes EC
,
Ball JK
. Shared Common Ancestry of Rodent Alphacoronaviruses Sampled Globally. Viruses. 2019 01 30; 11(2).
PMID:
30704076
.
Citations:
13
Fields:
Vir
Virology
Translation:
Animals
Cells
Leopardi S
,
Holmes EC
, Gastaldelli M, Tassoni L, Priori P, Scaravelli D, Zamperin G, De Benedictis P. Interplay between co-divergence and cross-species transmission in the evolutionary history of bat coronaviruses. Infect Genet Evol. 2018 03; 58:279-289.
PMID:
29355607
.
Citations:
23
Fields:
Bio
Biology
Com
Communicable Diseases
Gen
Genetics
Translation:
Animals
Cells
Wang W,
Lin XD
, Liao Y,
Guan XQ
,
Guo WP
, Xing JG,
Holmes EC
,
Zhang YZ
. Discovery of a Highly Divergent Coronavirus in the Asian House Shrew from China Illuminates the Origin of the Alphacoronaviruses. J Virol. 2017 Sep 01; 91(17).
PMID:
28637760
.
Citations:
19
Fields:
Vir
Virology
Lin XD
, Wang W, Hao ZY, Wang ZX,
Guo WP
,
Guan XQ
,
Wang MR
,
Wang HW
, Zhou RH,
Li MH
, Tang GP, Wu J,
Holmes EC
,
Zhang YZ
. Extensive diversity of coronaviruses in bats from China. Virology. 2017 07; 507:1-10.
PMID:
28384506
.
Citations:
36
Fields:
Vir
Virology
Translation:
Animals
Cells
Tao Y,
Shi M
, Chommanard C,
Queen K
, Zhang J,
Markotter W
, Kuzmin IV,
Holmes EC
,
Tong S
. Surveillance of Bat Coronaviruses in Kenya Identifies Relatives of Human Coronaviruses NL63 and 229E and Their Recombination History. J Virol. 2017 03 01; 91(5).
PMID:
28077633
.
Citations:
81
Fields:
Vir
Virology
Translation:
Animals
Cells
Huang C
,
Liu WJ
, Xu W, Jin T,
Zhao Y
,
Song J
, Shi Y, Ji W,
Jia H
, Zhou Y, Wen H, Zhao H, Liu H, Li H,
Wang Q
, Wu Y,
Wang L
, Liu D, Liu G,
Yu H
,
Holmes EC
, Lu L,
Gao GF
. A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene. PLoS Pathog. 2016 Sep; 12(9):e1005883.
PMID:
27676249
.
Citations:
40
Fields:
Mic
Microbiology
Lam TT,
Zhu H
,
Guan Y
,
Holmes EC
. Genomic Analysis of the Emergence, Evolution, and Spread of Human Respiratory RNA Viruses. Annu Rev Genomics Hum Genet. 2016 08 31; 17:193-218.
PMID:
27216777
.
Citations:
15
Fields:
Gen
Genetics
Gen
Genetics
Translation:
Humans
Cells
Valastro V,
Holmes EC
,
Britton P
, Fusaro A, Jackwood MW,
Cattoli G
,
Monne I
. S1 gene-based phylogeny of infectious bronchitis virus: An attempt to harmonize virus classification. Infect Genet Evol. 2016 Apr; 39:349-364.
PMID:
26883378
.
Citations:
110
Fields:
Bio
Biology
Com
Communicable Diseases
Gen
Genetics
Translation:
Animals
Cells
Sabir JS, Lam TT, Ahmed MM, Li L,
Shen Y
, Abo-Aba SE, Qureshi MI, Abu-Zeid M, Zhang Y, Khiyami MA, Alharbi NS, Hajrah NH, Sabir MJ, Mutwakil MH, Kabli SA, Alsulaimany FA, Obaid AY,
Zhou B
, Smith DK,
Holmes EC
,
Zhu H
,
Guan Y
. Co-circulation of three camel coronavirus species and recombination of MERS-CoVs in Saudi Arabia. Science. 2016 Jan 01; 351(6268):81-4.
PMID:
26678874
.
Citations:
168
Fields:
Sci
Science
Translation:
Humans
Animals
Cells
Duchêne DA, Duchêne S,
Holmes EC
, Ho SY. Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations. Mol Biol Evol. 2015 Nov; 32(11):2986-95.
PMID:
26163668
.
Citations:
9
Fields:
Mol
Molecular Biology
Translation:
Animals
Cells
Barasheed O
,
Rashid H
,
Alfelali M
, Tashani M, Azeem M, Bokhary H, Kalantan N, Samkari J, Heron L,
Kok J
,
Taylor J
, El Bashir H,
Memish ZA
, Haworth E,
Holmes EC
,
Dwyer DE
,
Asghar A
,
Booy R
. Viral respiratory infections among Hajj pilgrims in 2013. Virol Sin. 2014 Dec; 29(6):364-71.
PMID:
25413828
.
Citations:
21
Fields:
Vir
Virology
Translation:
Humans
Cells
Wang W,
Lin XD
,
Guo WP
, Zhou RH,
Wang MR
, Wang CQ, Ge S, Mei SH,
Li MH
,
Shi M
,
Holmes EC
,
Zhang YZ
. Discovery, diversity and evolution of novel coronaviruses sampled from rodents in China. Virology. 2015 Jan 01; 474:19-27.
PMID:
25463600
.
Citations:
48
Fields:
Vir
Virology
Translation:
Humans
Animals
Cells
Wang M,
Barasheed O
,
Rashid H
,
Booy R
, El Bashir H, Haworth E,
Ridda I
,
Holmes EC
,
Dwyer DE
,
Nguyen-Van-Tam J
,
Memish ZA
, Heron L. A cluster-randomised controlled trial to test the efficacy of facemasks in preventing respiratory viral infection among Hajj pilgrims. J Epidemiol Glob Health. 2015 Jun; 5(2):181-9.
PMID:
25922328
.
Citations:
16
Fields:
Epi
Epidemiology
Pub
Public Health
Translation:
Humans
Cui J,
Eden JS
,
Holmes EC
,
Wang LF
. Adaptive evolution of bat dipeptidyl peptidase 4 (dpp4): implications for the origin and emergence of Middle East respiratory syndrome coronavirus. Virol J. 2013 Oct 10; 10:304.
PMID:
24107353
.
Citations:
25
Fields:
Vir
Virology
Translation:
Animals
Cells
Holmes EC
,
Rambaut A
. Viral evolution and the emergence of SARS coronavirus. Philos Trans R Soc Lond B Biol Sci. 2004 Jul 29; 359(1447):1059-65.
PMID:
15306390
.
Citations:
52
Fields:
Bio
Biology
Translation:
Humans
Cells
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Concepts (422)
Derived automatically from this person's publications.
RNA Viruses
Evolution, Molecular
Viruses
Genome, Viral
Phylogeny
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Zhang, Yong-Zhen
Wille, Michelle
Rambaut, Andrew
Shi, Weifeng
Pybus, Oliver
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