Sebastian Duchene

InstitutionUniversity of Melbourne
AddressVIC
Australia
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    Publication Timeline
    COVID-19 publications
    Bar chart showing 6 Covid-19 publications, with a maximum of 2 publications in December 2020
    All Publications
    Bar chart showing 57 publications over 10 distinct years, with a maximum of 11 publications in 2018
    These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.

    To see the data from both graphs as text, click here.
    Publication Field Summary
    This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text, click here.
    Publication List
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Lane CR, Sherry NL, Porter AF, Duchene S, Horan K, Andersson P, Wilmot M, Turner A, Dougall S, Johnson SA, Sait M, Gonçalves da Silva A, Ballard SA, Hoang T, Stinear TP, Caly L, Sintchenko V, Graham R, McMahon J, Smith D, Leong LE, Meumann EM, Cooley L, Schwessinger B, Rawlinson W, van Hal SJ, Stephens N, Catton M, Looker C, Crouch S, Sutton B, Alpren C, Williamson DA, Seemann T, Howden BP. Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study. Lancet Public Health. 2021 08; 6(8):e547-e556. PMID: 34252365.
      Citations: 4     Fields:    Translation:Humans
    2. Lam A, Duchene S. The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic. Viruses. 2021 Jan 08; 13(1). PMID: 33430050.
      Citations:    Fields:    Translation:HumansPHPublic Health
    3. Di Giallonardo F, Duchene S, Puglia I, Curini V, Profeta F, Cammà C, Marcacci M, Calistri P, Holmes EC, Lorusso A. Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy. Viruses. 2020 12 14; 12(12). PMID: 33327566.
      Citations: 10     Fields:    Translation:Humans
    4. Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand. Nat Commun. 2020 12 11; 11(1):6351. PMID: 33311501.
      Citations: 34     Fields:    Translation:HumansPHPublic Health
    5. Seemann T, Lane CR, Sherry NL, Duchene S, Gonçalves da Silva A, Caly L, Sait M, Ballard SA, Horan K, Schultz MB, Hoang T, Easton M, Dougall S, Stinear TP, Druce J, Catton M, Sutton B, van Diemen A, Alpren C, Williamson DA, Howden BP. Tracking the COVID-19 pandemic in Australia using genomics. Nat Commun. 2020 09 01; 11(1):4376. PMID: 32873808.
      Citations: 53     Fields:    Translation:HumansCellsPHPublic Health
    6. Duchene S, Featherstone L, Haritopoulou-Sinanidou M, Rambaut A, Lemey P, Baele G. Temporal signal and the phylodynamic threshold of SARS-CoV-2. Virus Evol. 2020 Jul; 6(2):veaa061. PMID: 33235813.
      Citations: 78     
    7. Duchêne DA, Duchêne S, Holmes EC, Ho SY. Evaluating the Adequacy of Molecular Clock Models Using Posterior Predictive Simulations. Mol Biol Evol. 2015 Nov; 32(11):2986-95. PMID: 26163668.
      Citations: 9     Fields:    Translation:AnimalsCells