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Joseph L DeRisi
Institution
Chan Zuckerberg Biohub
Address
San Francisco
California
United States
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Publication Timeline
COVID-19 publications
All Publications
These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.
To see the data from both graphs as text,
click here
.
Year
Publications
2002
6
2003
5
2004
4
2005
6
2006
10
2007
7
2008
6
2009
6
2010
11
2011
11
2012
13
2013
8
2014
12
2015
10
2016
10
2017
17
2018
9
2019
3
2020
9
2021
7
2022
1
These graphs show COVID-19 publications by month since August 2019 and all publications written by authors of COVID-19 publications over the past 30 years.
To return to the graphs,
click here
.
Publication Field Summary
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text,
click here
.
This graph shows the number and percent of publications by field. Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications. Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written. To see the data as text,
click here
.
Publication List
Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications.
Show:
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Covid-19 specific publications
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Newest
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Most Cited
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Most Discussed
PMC Citations
indicate the number of times the publication was cited by articles in PubMed Central, and the
Altmetric
score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.)
Fields
are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation
tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
Peng J
,
Liu J
,
Mann SA
,
Mitchell AM
,
Laurie MT
,
Sunshine S
,
Pilarowski G
,
Ayscue P
,
Kistler A
,
Vanaerschot M
,
Li LM
,
McGeever A
,
Chow ED
,
Marquez C
,
Nakamura R
,
Rubio L
,
Chamie G
,
Jones D
,
Jacobo J
,
Rojas S
,
Rojas S
,
Tulier-Laiwa V
,
Black D
,
Martinez J
,
Naso J
,
Schwab J
,
Petersen M
,
Havlir D
,
DeRisi J
. Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a Community-Based Testing Site in San Francisco. Clin Infect Dis. 2022 01 07; 74(1):32-39.
PMID:
33788923
.
Citations:
11
Fields:
Com
Communicable Diseases
Translation:
Humans
Sarma A
,
Christenson SA
,
Byrne A
,
Mick E
,
Pisco AO
,
DeVoe C
,
Deiss T
,
Ghale R
,
Zha BS
,
Tsitsiklis A
, Jauregui A,
Moazed F
,
Detweiler AM
,
Spottiswoode N
,
Sinha P
,
Neff N
,
Tan M
,
Serpa PH
,
Willmore A
,
Ansel KM
,
Wilson JG
,
Leligdowicz A
,
Siegel ER
,
Sirota M
,
DeRisi JL
,
Matthay MA
,
Hendrickson CM
,
Kangelaris KN
,
Krummel MF
,
Woodruff PG
,
Erle DJ
,
Calfee CS
,
Langelier CR
. Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS. Nat Commun. 2021 08 26; 12(1):5152.
PMID:
34446707
.
Citations:
1
Fields:
Bio
Biology
Sci
Science
Translation:
Humans
van der Wijst MGP
,
Vazquez SE
,
Hartoularos GC
,
Bastard P
,
Grant T
,
Bueno R
,
Lee DS
,
Greenland JR
,
Sun Y
,
Perez R
,
Ogorodnikov A
,
Ward A
,
Mann SA
,
Lynch KL
,
Yun C
,
Havlir DV
,
Chamie G
,
Marquez C
,
Greenhouse B
,
Lionakis MS
,
Norris PJ
,
Dumont LJ
,
Kelly K
,
Zhang P
,
Zhang Q
,
Gervais A
,
Le Voyer T
,
Whatley A
,
Si Y
,
Byrne A
,
Combes AJ
,
Rao AA
,
Song YS
,
Fragiadakis GK
,
Kangelaris K
,
Calfee CS
,
Erle DJ
,
Hendrickson C
,
Krummel MF
,
Woodruff PG
,
Langelier CR
,
Casanova JL
,
Derisi JL
,
Anderson MS
,
Ye CJ
. Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19. Sci Transl Med. 2021 09 22; 13(612):eabh2624.
PMID:
34429372
.
Citations:
10
Fields:
Med
Medicine (General)
Sci
Science
Translation:
Humans
Vazquez SE
,
Bastard P
,
Kelly K
,
Gervais A
,
Norris PJ
,
Dumont LJ
,
Casanova JL
,
Anderson MS
,
DeRisi JL
. Neutralizing Autoantibodies to Type I Interferons in COVID-19 Convalescent Donor Plasma. J Clin Immunol. 2021 08; 41(6):1169-1171.
PMID:
34009544
.
Citations:
8
Fields:
All
Allergy and Immunology
Translation:
Humans
Song E
,
Bartley CM
,
Chow RD
,
Ngo TT
,
Jiang R
,
Zamecnik CR
,
Dandekar R
,
Loudermilk RP
,
Dai Y
,
Liu F
,
Sunshine S
,
Liu J
,
Wu W
,
Hawes IA
,
Alvarenga BD
,
Huynh T
,
McAlpine L
,
Rahman NT
,
Geng B
,
Chiarella J
,
Goldman-Israelow B
,
Vogels CBF
,
Grubaugh ND
,
Casanovas-Massana A
,
Phinney BS
,
Salemi M
,
Alexander JR
,
Gallego JA
,
Lencz T
,
Walsh H
,
Wapniarski AE
,
Mohanty S
,
Lucas C
,
Klein J
,
Mao T
,
Oh J
,
Ring A
,
Spudich S
,
Ko AI
,
Kleinstein SH
,
Pak J
,
DeRisi JL
,
Iwasaki A
,
Pleasure SJ
,
Wilson MR
,
Farhadian SF
. Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms. Cell Rep Med. 2021 05 18; 2(5):100288.
PMID:
33969321
.
Citations:
13
Pilarowski G
,
Lebel P
,
Sunshine S
,
Liu J
,
Crawford E
,
Marquez C
,
Rubio L
,
Chamie G
,
Martinez J
,
Peng J
,
Black D
,
Wu W
,
Pak J
,
Laurie MT
,
Jones D
,
Miller S
,
Jacobo J
,
Rojas S
,
Rojas S
,
Nakamura R
,
Tulier-Laiwa V
,
Petersen M
,
Havlir DV
,
DeRisi J
. Performance Characteristics of a Rapid Severe Acute Respiratory Syndrome Coronavirus 2 Antigen Detection Assay at a Public Plaza Testing Site in San Francisco. J Infect Dis. 2021 04 08; 223(7):1139-1144.
PMID:
33394052
.
Citations:
45
Fields:
Com
Communicable Diseases
Translation:
Humans
Randremanana RV
,
Andriamandimby SF
,
Rakotondramanga JM
,
Razanajatovo NH
,
Mangahasimbola RT
,
Randriambolamanantsoa TH
,
Ranaivoson HC
,
Rabemananjara HA
,
Razanajatovo I
,
Razafindratsimandresy R
,
Rabarison JH
,
Brook CE
,
Rakotomanana F
,
Rabetombosoa RM
,
Razafimanjato H
,
Ahyong V
,
Raharinosy V
,
Raharimanga V
,
Raharinantoanina SJ
,
Randrianarisoa MM
,
Bernardson B
,
Randrianasolo L
,
Randriamampionona LBN
,
Tato CM
,
DeRisi JL
,
Dussart P
,
Vololoniaina MC
,
Randriatsarafara FM
,
Randriamanantany ZA
,
Heraud JM
. The COVID-19 epidemic in Madagascar: clinical description and laboratory results of the first wave, march-september 2020. Influenza Other Respir Viruses. 2021 07; 15(4):457-468.
PMID:
33586912
.
Citations:
1
Fields:
Vir
Virology
Translation:
Humans
Madera S
,
Crawford E
,
Langelier C
,
Tran NK
,
Thornborrow E
,
Miller S
,
DeRisi JL
. Nasopharyngeal SARS-CoV-2 viral loads in young children do not differ significantly from those in older children and adults. Sci Rep. 2021 02 04; 11(1):3044.
PMID:
33542262
.
Citations:
15
Fields:
Sci
Science
Translation:
Humans
Vanaerschot M
,
Mann SA
,
Webber JT
,
Kamm J
,
Bell SM
,
Bell J
,
Hong SN
,
Nguyen MP
,
Chan LY
,
Bhatt KD
,
Tan M
,
Detweiler AM
,
Espinosa A
,
Wu W
,
Batson J
,
Dynerman D
,
Wadford DA
,
Puschnik AS
,
Neff N
,
Ahyong V
,
Miller S
,
Ayscue P
,
Tato CM
,
Paul S
,
Kistler AL
,
DeRisi JL
,
Crawford ED
. Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR. J Clin Microbiol. 2020 12 17; 59(1).
PMID:
33067272
.
Citations:
18
Fields:
Mic
Microbiology
Translation:
Humans
Fozouni P
,
Son S
,
Díaz de León Derby M
,
Knott GJ
,
Gray CN
,
D'Ambrosio MV
,
Zhao C
,
Switz NA
,
Kumar GR
,
Stephens SI
,
Boehm D
,
Tsou CL
,
Shu J
,
Bhuiya A
,
Armstrong M
,
Harris AR
,
Chen PY
,
Osterloh JM
,
Meyer-Franke A
,
Joehnk B
,
Walcott K
,
Sil A
,
Langelier C
,
Pollard KS
,
Crawford ED
,
Puschnik AS
,
Phelps M
,
Kistler A
,
DeRisi JL
,
Doudna JA
,
Fletcher DA
,
Ott M
. Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy. Cell. 2021 01 21; 184(2):323-333.e9.
PMID:
33306959
.
Citations:
61
Fields:
Cel
Cell Biology
Translation:
Humans
Animals
Cells
Mick E
,
Kamm J
,
Pisco AO
,
Ratnasiri K
,
Babik JM
,
Castañeda G
,
DeRisi JL
,
Detweiler AM
,
Hao SL
,
Kangelaris KN
,
Kumar GR
,
Li LM
,
Mann SA
,
Neff N
,
Prasad PA
,
Serpa PH
,
Shah SJ
,
Spottiswoode N
,
Tan M
,
Calfee CS
,
Christenson SA
,
Kistler A
,
Langelier C
. Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses. Nat Commun. 2020 11 17; 11(1):5854.
PMID:
33203890
.
Citations:
30
Fields:
Bio
Biology
Sci
Science
Translation:
Humans
Cells
PH
Public Health
Crawford ED
,
Acosta I
,
Ahyong V
,
Anderson EC
,
Arevalo S
,
Asarnow D
,
Axelrod S
,
Ayscue P
,
Azimi CS
,
Azumaya CM
,
Bachl S
,
Bachmutsky I
,
Bhaduri A
,
Brown JB
,
Batson J
,
Behnert A
,
Boileau RM
,
Bollam SR
,
Bonny AR
,
Booth D
,
Borja MJB
,
Brown D
,
Buie B
,
Burnett CE
,
Byrnes LE
,
Cabral KA
,
Cabrera JP
,
Caldera S
,
Canales G
,
Castañeda GR
,
Chan AP
,
Chang CR
,
Charles-Orszag A
,
Cheung C
,
Chio U
,
Chow ED
,
Citron YR
,
Cohen A
,
Cohn LB
,
Chiu C
,
Cole MA
,
Conrad DN
,
Constantino A
,
Cote A
,
Crayton-Hall T
,
Darmanis S
,
Detweiler AM
,
Dial RL
,
Dong S
,
Duarte EM
,
Dynerman D
,
Egger R
,
Fanton A
,
Frumm SM
,
Fu BXH
,
Garcia VE
,
Garcia J
,
Gladkova C
,
Goldman M
,
Gomez-Sjoberg R
, et al. Rapid deployment of SARS-CoV-2 testing: The CLIAHUB. PLoS Pathog. 2020 10; 16(10):e1008966.
PMID:
33112933
.
Citations:
9
Fields:
Mic
Microbiology
Translation:
Humans
Cells
PH
Public Health
Kalantar KL
,
Carvalho T
,
de Bourcy CFA
,
Dimitrov B
,
Dingle G
,
Egger R
,
Han J
,
Holmes OB
,
Juan YF
,
King R
,
Kislyuk A
,
Lin MF
,
Mariano M
,
Morse T
,
Reynoso LV
,
Cruz DR
,
Sheu J
,
Tang J
,
Wang J
,
Zhang MA
,
Zhong E
,
Ahyong V
,
Lay S
,
Chea S
,
Bohl JA
,
Manning JE
,
Tato CM
,
DeRisi JL
. IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring. Gigascience. 2020 10 15; 9(10).
PMID:
33057676
.
Citations:
21
Fields:
Com
Computational Biology
Gen
Genetics
Translation:
Humans
Cells
PH
Public Health
Zamecnik CR
,
Rajan JV
,
Yamauchi KA
,
Mann SA
,
Loudermilk RP
,
Sowa GM
,
Zorn KC
,
Alvarenga BD
,
Gaebler C
,
Caskey M
,
Stone M
,
Norris PJ
,
Gu W
,
Chiu CY
,
Ng D
,
Byrnes JR
,
Zhou XX
,
Wells JA
,
Robbiani DF
,
Nussenzweig MC
,
DeRisi JL
,
Wilson MR
. ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens. Cell Rep Med. 2020 10 20; 1(7):100123.
PMID:
32995758
.
Citations:
23
Shah SJ
,
Barish PN
,
Prasad PA
,
Kistler A
,
Neff N
,
Kamm J
,
Li LM
,
Chiu CY
,
Babik JM
,
Fang MC
,
Abe-Jones Y
,
Alipanah N
,
Alvarez FN
,
Botvinnik OB
,
Castaneda G
,
Dadasovich RM
,
Davis J
,
Deng X
,
DeRisi JL
,
Detweiler AM
,
Federman S
,
Haliburton J
,
Hao S
,
Kerkhoff AD
,
Kumar GR
,
Malcolm KB
,
Mann SA
,
Martinez S
,
Mary RK
,
Mick E
,
Mwakibete L
,
Najafi N
,
Peluso MJ
,
Phelps M
,
Pisco AO
,
Ratnasiri K
,
Rubio LA
,
Sellas A
,
Sherwood KD
,
Sheu J
,
Spottiswoode N
,
Tan M
,
Yu G
,
Kangelaris KN
,
Langelier C
. Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. EClinicalMedicine. 2020 Oct; 27:100518.
PMID:
32864588
.
Citations:
26
Saha S
,
Malaker R
,
Sajib MSI
,
Hasanuzzaman M
,
Rahman H
,
Ahmed ZB
,
Islam MS
,
Islam M
,
Hooda Y
,
Ahyong V
,
Vanaerschot M
,
Batson J
,
Hao S
,
Kamm J
,
Kistler A
,
Tato CM
,
DeRisi JL
,
Saha SK
. Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh. Microbiol Resour Announc. 2020 Jun 11; 9(24).
PMID:
32527780
.
Citations:
12
Chen EC,
Miller SA
,
DeRisi JL
,
Chiu CY
. Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. J Vis Exp. 2011 Apr 27; (50).
PMID:
21559002
.
Citations:
32
Fields:
Bio
Biology
Med
Medicine (General)
Translation:
Humans
Cells
Wootton SC, Kim DS,
Kondoh Y
, Chen E, Lee JS, Song JW, Huh JW, Taniguchi H,
Chiu C
,
Boushey H
, Lancaster LH, Wolters PJ,
DeRisi J
, Ganem D, Collard HR. Viral infection in acute exacerbation of idiopathic pulmonary fibrosis. Am J Respir Crit Care Med. 2011 Jun 15; 183(12):1698-702.
PMID:
21471095
.
Citations:
81
Fields:
Cri
Critical Care
Pul
Pulmonary Medicine
Translation:
Humans
Cells
Kistler A
, Avila PC, Rouskin S, Wang D,
Ward T
,
Yagi S
, Schnurr D, Ganem D,
DeRisi JL
,
Boushey HA
. Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J Infect Dis. 2007 Sep 15; 196(6):817-25.
PMID:
17703411
.
Citations:
141
Fields:
Com
Communicable Diseases
Translation:
Humans
Cells
Wang D,
Urisman A
, Liu YT,
Springer M
,
Ksiazek TG
,
Erdman DD
, Mardis ER, Hickenbotham M, Magrini V, Eldred J, Latreille JP, Wilson RK, Ganem D,
DeRisi JL
. Viral discovery and sequence recovery using DNA microarrays. PLoS Biol. 2003 Nov; 1(2):E2.
PMID:
14624234
.
Citations:
192
Fields:
Bio
Biology
Translation:
Humans
Cells
Rota PA
,
Oberste MS
, Monroe SS, Nix WA,
Campagnoli R
, Icenogle JP, Peñaranda S,
Bankamp B
, Maher K, Chen MH, Tong S,
Tamin A
, Lowe L, Frace M,
DeRisi JL
, Chen Q, Wang D,
Erdman DD
, Peret TC,
Burns C
,
Ksiazek TG
, Rollin PE, Sanchez A, Liffick S, Holloway B, Limor J, McCaustland K, Olsen-Rasmussen M,
Fouchier R
,
Günther S
,
Osterhaus AD
,
Drosten C
,
Pallansch MA
,
Anderson LJ
, Bellini WJ. Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science. 2003 May 30; 300(5624):1394-9.
PMID:
12730500
.
Citations:
1045
Fields:
Sci
Science
Translation:
Humans
Cells
Ksiazek TG
,
Erdman D
,
Goldsmith CS
,
Zaki SR
, Peret T, Emery S,
Tong S
, Urbani C, Comer JA, Lim W, Rollin PE,
Dowell SF
, Ling AE, Humphrey CD,
Shieh WJ
,
Guarner J
,
Paddock CD
,
Rota P
,
Fields B
,
DeRisi J
, Yang JY, Cox N,
Hughes JM
,
LeDuc JW
, Bellini WJ,
Anderson LJ
. A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med. 2003 May 15; 348(20):1953-66.
PMID:
12690092
.
Citations:
1737
Fields:
Med
Medicine (General)
Translation:
Humans
Animals
Cells
PH
Public Health
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Concepts (326)
Derived automatically from this person's publications.
Metagenomics
Drug Resistance
Plasmodium falciparum
Boidae
Arenaviridae
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People in Profiles who have published with this person.
Langelier, Charles
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Madera, Sharline
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